Transcript: LINC00358:1

Basic information

LNCipedia transcript ID: LINC00358:1 
LNCipedia gene ID: LINC00358
Location (hg19): chr13:62578226-62603681
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 708 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00021662; ENST00000432697; ENST00000432697.1; LINC00358-001; OTTHUMT00000045186.1; NONHSAT140135
Alternative gene names: XLOC_010635; linc-PCDH20-1; ENSG00000229578; RP11-71L7.1; ENSG00000229578.1; LINC00358; OTTHUMG00000017014.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.2222 non-coding 
CPAT coding probability 3.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00358:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH20-1:1
3.1 lnc-PCDH20-1:1
4.0 LINC00358:1
4.1 LINC00358:1
5.0 LINC00358:1
5.1 LINC00358:1
5.2 LINC00358:1