Transcript: LINC00365:1

Basic information

LNCipedia transcript ID: LINC00365:1 
HGNC Gene Symbol: LINC00365    
HGNC Full Gene Name: long intergenic non-protein coding RNA 365
Ensembl Gene ID: ENSG00000224511
Ensembl Transcript ID: ENST00000432770
Location (hg19): chr13:30681736-30683012
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021617; ENST00000432770; ENST00000432770.1; LINC00365-001; OTTHUMT00000044344.2; NONHSAT032763
Alternative gene names: XLOC_010553; linc-UBL3-2; ENSG00000224511; RP11-629E24.1; ENSG00000224511.1; LINC00365; OTTHUMG00000016663.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.8005 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00365:1 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KATNAL1-4:1
3.1 lnc-KATNAL1-4:1
4.0 LINC00365:1
4.1 LINC00365:1
5.0 LINC00365:1
5.1 LINC00365:1
5.2 LINC00365:1