Transcript: LINC00370:2

Basic information

LNCipedia transcript ID: LINC00370:2 
HGNC Gene Symbol: LINC00370    
HGNC Full Gene Name: long intergenic non-protein coding RNA 370
Ensembl Gene ID: ENSG00000223617
Ensembl Transcript ID: ENST00000455487
Location (hg19): chr13:109934321-109940081
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 698 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021594; ENST00000455487; ENST00000455487.1; RP11-54H7.2-001; OTTHUMT00000045751.1; NONHSAT035102
Alternative gene names: XLOC_010491; linc-COL4A2-7; ENSG00000223617; RP11-54H7.2; ENSG00000223617.1; OTTHUMG00000017334.1; LINC00370;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.8937 non-coding 
CPAT coding probability 6.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00370:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYO16-1:2
3.1 lnc-MYO16-1:2
4.0 LINC00370:2
4.1 LINC00370:2
5.0 LINC00370:2
5.1 LINC00370:2
5.2 LINC00370:2