Transcript: LINC00378:2

Basic information

LNCipedia transcript ID: LINC00378:2 
HGNC Gene Symbol: LINC00378    
HGNC Full Gene Name: long intergenic non-protein coding RNA 378
Ensembl Gene ID: ENSG00000225249
Ensembl Transcript ID: ENST00000413402
Location (hg19): chr13:61259333-61268202
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413402; ENST00000413402.1; LINC00378-002; OTTHUMT00000045180.1; NONHSAT140134; ENST00000413402.5
Alternative gene names: ENSG00000225249; RP11-521H3.1; ENSG00000225249.1; LINC00378; OTTHUMG00000017008.1; ENSG00000225249.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.3817 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00378:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TDRD3-1:1
3.1 lnc-TDRD3-1:2
4.0 LINC00378:2
4.1 LINC00378:2
5.0 LINC00378:2
5.1 LINC00378:2
5.2 LINC00378:2