Transcript: LINC00379:2

Basic information

LNCipedia transcript ID: LINC00379:2 
HGNC Gene Symbol: LINC00379    
HGNC Full Gene Name: long intergenic non-protein coding RNA 379
Ensembl Gene ID: ENSG00000229557
Ensembl Transcript ID: ENST00000427717
Location (hg19): chr13:91779867-91783661
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 431 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427717; ENST00000427717.1; LINC00379-002; OTTHUMT00000045441.1; NONHSAT140142
Alternative gene names: ENSG00000229557; RP11-51B13.2; ENSG00000229557.1; LINC00379; OTTHUMG00000017188.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -312.3123 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00379:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCT-3:1
3.1 lnc-DCT-6:1
4.0 LINC00379:2
4.1 LINC00379:2
5.0 LINC00379:2
5.1 LINC00379:2
5.2 LINC00379:2