Transcript: LINC00380:2

Basic information

LNCipedia transcript ID: LINC00380:2 
HGNC Gene Symbol: LINC00380    
HGNC Full Gene Name: long intergenic non-protein coding RNA 380
Ensembl Gene ID: ENSG00000234625
Ensembl Transcript ID: ENST00000442478
Location (hg19): chr13:91739508-91741847
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 353 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021685; ENST00000442478; ENST00000442478.1; RP11-51B13.1-001; OTTHUMT00000045439.1; NONHSAT034658
Alternative gene names: XLOC_010690; linc-SLITRK6-1; ENSG00000234625; RP11-51B13.1; ENSG00000234625.1; OTTHUMG00000017187.1; LINC00380; TCONS_00021685


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00380:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCT-4:1
3.1 lnc-DCT-7:1
4.0 LINC00380:2
4.1 LINC00380:2
5.0 LINC00380:2
5.1 LINC00380:2
5.2 LINC00380:2