Transcript: LINC00385:2

Basic information

LNCipedia transcript ID: LINC00385:2 
HGNC Gene Symbol: LINC00385    
HGNC Full Gene Name: long intergenic non-protein coding RNA 385
Ensembl Gene ID: ENSG00000232643
Ensembl Transcript ID: ENST00000435044
Location (hg19): chr13:30728203-30728723
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 374 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435044; ENST00000435044.1; RP11-490N5.1-001; OTTHUMT00000044345.1; NONHSAT032768
Alternative gene names: ENSG00000232643; RP11-490N5.1; ENSG00000232643.1; OTTHUMG00000016664.1; LINC00385;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 7.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00385:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-90M5.1.1-2:1
3.1 lnc-RP11-90M5.1.1-3:1
4.0 LINC00385:2
4.1 LINC00385:2
5.0 LINC00385:2
5.1 LINC00385:2
5.2 LINC00385:2