Transcript: LINC00387:1

Basic information

LNCipedia transcript ID: LINC00387:1 
HGNC Gene Symbol: LINC00387    
HGNC Full Gene Name: long intergenic non-protein coding RNA 387
Ensembl Gene ID: ENSG00000231914
Ensembl Transcript ID: ENST00000422609
Location (hg19): chr13:19246967-19250303
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 458 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021522; ENST00000422609; ENST00000422609.1; LINC00387-001; OTTHUMT00000043977.1; NONHSAT032193
Alternative gene names: XLOC_010284; linc-MPHOSPH8-8; ENSG00000231914; RP11-484H12.5; ENSG00000231914.1; LINC00387; OTTHUMG00000016454.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.2724 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00387:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-408E5.4.1-7:1
3.1 lnc-RP11-408E5.4.1-8:1
4.0 LINC00387:1
4.1 LINC00387:1
5.0 LINC00387:1
5.1 LINC00387:1
5.2 LINC00387:1