Transcript: LINC00391:1

Basic information

LNCipedia transcript ID: LINC00391:1 
HGNC Gene Symbol: LINC00391    
HGNC Full Gene Name: long intergenic non-protein coding RNA 391
Ensembl Gene ID: ENSG00000238230
Ensembl Transcript ID: ENST00000433569
Location (hg19): chr13:95351948-95355116
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1844 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021688; ENST00000433569; ENST00000433569.1; LINC00391-001; OTTHUMT00000045470.1; NONHSAT034734
Alternative gene names: XLOC_010694; linc-TGDS-2; ENSG00000238230; RP11-477B16.4; ENSG00000238230.1; LINC00391; OTTHUMG00000017212.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.2921 non-coding 
CPAT coding probability 42.41% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00391:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX21-2:1
3.1 lnc-SOX21-2:1
4.0 LINC00391:1
4.1 LINC00391:1
5.0 LINC00391:1
5.1 LINC00391:1
5.2 LINC00391:1

loading