Transcript: LINC00395:3

Basic information

LNCipedia transcript ID: LINC00395:3 
HGNC Gene Symbol: LINC00395    
HGNC Full Gene Name: long intergenic non-protein coding RNA 395
Ensembl Gene ID: ENSG00000231061
Ensembl Transcript ID: ENST00000444536
Location (hg19): chr13:64241814-64291151
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021666; ENST00000444536.1; LINC00395-002; OTTHUMT00000045196.1; NONHSAT034169
Alternative gene names: XLOC_010643; linc-PCDH20-8; ENSG00000231061.1; LINC00395; OTTHUMG00000017022.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.3609 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00395:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH20-9:3
3.1 lnc-PCDH20-9:3
4.0 LINC00395:3
4.1 LINC00395:3
5.0 LINC00395:3
5.1 LINC00395:3
5.2 LINC00395:3