Transcript: LINC00397:1

Basic information

LNCipedia transcript ID: LINC00397:1 
LNCipedia gene ID: LINC00397
Ensembl Gene ID: ENSG00000272046
Ensembl Transcript ID: ENST00000606221
Location (hg19): chr13:88459889-88463487
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3599 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606221.1
Alternative gene names: ENSG00000272046.1; RP11-471M2.3; TCONS_00021582; AL445647.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.2839 non-coding 
CPAT coding probability 36.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00397:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLITRK6-15:1
4.0 LINC00397:1
4.1 LINC00397:1
5.0 LINC00397:1
5.1 LINC00397:1
5.2 LINC00397:1