Transcript: LINC00410:1

Basic information

LNCipedia transcript ID: LINC00410:1 
HGNC Gene Symbol: LINC00410    
HGNC Full Gene Name: long intergenic non-protein coding RNA 410
Ensembl Gene ID: ENSG00000231674
Ensembl Transcript ID: ENST00000419272
RefSeq ID: NR_027039
Location (hg19): chr13:91543208-91578851
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2018 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021477; ENST00000419272; ENST00000419272.1; LINC00410-001; OTTHUMT00000045437.1; NONHSAT034656; NR_027039; NR_027039.1
Alternative gene names: XLOC_010689; linc-SLITRK6-9; ENSG00000231674; RP11-432D3.1; ENSG00000231674.1; LINC00410; OTTHUMG00000017185.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.5895 non-coding 
CPAT coding probability 6.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00410:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCT-5:1
3.1 lnc-DCT-8:1
4.0 LINC00410:1
4.1 LINC00410:1
5.0 LINC00410:1
5.1 LINC00410:1
5.2 LINC00410:1