Transcript: LINC00411:2

Basic information

LNCipedia transcript ID: LINC00411:2 
HGNC Gene Symbol: LINC00411    
HGNC Full Gene Name: long intergenic non-protein coding RNA 411
Ensembl Gene ID: ENSG00000229599
Ensembl Transcript ID: ENST00000436722
Location (hg19): chr13:101593116-101596618
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 461 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436722; ENST00000436722.1; LINC00411-001; OTTHUMT00000045661.1
Alternative gene names: ENSG00000229599; RP11-118F16.1; ENSG00000229599.1; LINC00411; OTTHUMG00000017293.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -264.1202 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00411:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NALCN-1:1
3.1 lnc-NALCN-1:1
4.0 LINC00411:2
4.1 LINC00411:2
5.0 LINC00411:2
5.1 LINC00411:2
5.2 LINC00411:2