Transcript: LINC00415:2

Basic information

LNCipedia transcript ID: LINC00415:2 
HGNC Gene Symbol: LINC00415    
HGNC Full Gene Name: long intergenic non-protein coding RNA 415
Ensembl Gene ID: ENSG00000231983
Ensembl Transcript ID: ENST00000439079
Location (hg19): chr13:26626414-26627523
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 435 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021614; ENST00000439079; ENST00000439079.1; LINC00415-001; OTTHUMT00000044235.1
Alternative gene names: XLOC_010538; linc-SHISA2; ENSG00000231983; RP11-398O19.3; ENSG00000231983.1; LINC00415; OTTHUMG00000016610.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.9422 non-coding 
CPAT coding probability 7.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00415:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHISA2-1:1
3.1 lnc-SHISA2-1:1
4.0 LINC00415:2
4.1 LINC00415:2
5.0 LINC00415:2
5.1 LINC00415:2
5.2 LINC00415:2