Transcript: LINC00423:2

Basic information

LNCipedia transcript ID: LINC00423:2 
HGNC Gene Symbol: LINC00423    
HGNC Full Gene Name: long intergenic non-protein coding RNA 423
Ensembl Gene ID: ENSG00000226968
Ensembl Transcript ID: ENST00000421002
Location (hg19): chr13:33451569-33485788
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 903 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021632; ENST00000421002; ENST00000421002.1; LINC00423-001; OTTHUMT00000044431.1; NONHSAT140115
Alternative gene names: XLOC_010565; linc-N4BP2L2-2; ENSG00000226968; RP11-380B4.2; ENSG00000226968.1; LINC00423; OTTHUMG00000016703.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.4152 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00423:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STARD13-1:1
3.1 lnc-STARD13-1:1
4.0 LINC00423:2
4.1 LINC00423:2
5.0 LINC00423:2
5.1 LINC00423:2
5.2 LINC00423:2