Transcript: LINC00424:2

Basic information

LNCipedia transcript ID: LINC00424:2 
LNCipedia gene ID: LINC00424
Location (hg19): chr13:22446909-22450817
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1623 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021612; ENST00000413124; ENST00000413124.1; LINC00424-001; OTTHUMT00000044133.1; NONHSAT032409
Alternative gene names: XLOC_010530; linc-EFHA1-3; ENSG00000226722; RP11-107B1.1; ENSG00000226722.1; LINC00424; OTTHUMG00000016547.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.6412 non-coding 
CPAT coding probability 3.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00424:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFHA1-2:1
3.1 lnc-EFHA1-2:1
4.0 LINC00424:2
4.1 LINC00424:2
5.0 LINC00424:2
5.1 LINC00424:2
5.2 LINC00424:2