Transcript: LINC00426:17

Basic information

LNCipedia transcript ID: LINC00426:17 
HGNC Gene Symbol: LINC00426    
HGNC Full Gene Name: long intergenic non-protein coding RNA 426
Ensembl Gene ID: ENSG00000238121
Ensembl Transcript ID: ENST00000417079
Location (hg19): chr13:30916597-30939898
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1045 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021621; ENST00000417079; ENST00000417079.1; LINC00426-001; OTTHUMT00000044349.2; NONHSAT032783; ENST00000417079.5
Alternative gene names: XLOC_010556; linc-KATNAL1-3; ENSG00000238121; RP11-374F3.4; ENSG00000238121.1; LINC00426; OTTHUMG00000016668.4; ENSG00000238121.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.5794 non-coding 
CPAT coding probability 15.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00426:17 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget
  2. You (2014), Noncoding RNA small nucleolar RNA host gene 1 promote cell proliferation in nonsmall cell lung cancer., Indian J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KATNAL1-3:15
3.1 lnc-KATNAL1-3:15
4.0 LINC00426:17
4.1 LINC00426:17
5.0 LINC00426:17
5.1 LINC00426:17
5.2 LINC00426:17