Transcript: LINC00426:9

Basic information

LNCipedia transcript ID: LINC00426:9 
LNCipedia gene ID: LINC00426
RefSeq ID: NR_024464
Location (hg19): chr13:30914403-30948051
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1608 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024464; NR_024464.2
Alternative gene names: ; LINC00426


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.9524 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00426:9 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget
  2. You (2014), Noncoding RNA small nucleolar RNA host gene 1 promote cell proliferation in nonsmall cell lung cancer., Indian J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KATNAL1-3:23
4.0 LINC00426:9
4.1 LINC00426:9
5.0 LINC00426:9
5.1 LINC00426:9
5.2 LINC00426:9