Transcript: LINC00427:1

Basic information

LNCipedia transcript ID: LINC00427:1 
HGNC Gene Symbol: LINC00427    
HGNC Full Gene Name: long intergenic non-protein coding RNA 427
Ensembl Gene ID: ENSG00000236463
Ensembl Transcript ID: ENST00000412722
Location (hg19): chr13:30890497-30894040
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021619; ENST00000412722; ENST00000412722.1; LINC00427-001; OTTHUMT00000044348.2; NONHSAT032774
Alternative gene names: XLOC_010555; linc-KATNAL1-1; ENSG00000236463; RP11-374F3.3; ENSG00000236463.1; LINC00427; OTTHUMG00000016667.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.4881 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00427:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KATNAL1-1:1
3.1 lnc-KATNAL1-1:1
4.0 LINC00427:1
4.1 LINC00427:1
5.0 LINC00427:1
5.1 LINC00427:1
5.2 LINC00427:1