Transcript: LINC00430:2

Basic information

LNCipedia transcript ID: LINC00430:2 
LNCipedia gene ID: LINC00430
Location (hg19): chr13:87564173-87589062
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 296 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00021581; ENST00000457672; ENST00000457672.1; RP11-366K1.1-001; OTTHUMT00000045409.1
Alternative gene names: XLOC_010461; linc-SLITRK5-2; ENSG00000233528; RP11-366K1.1; ENSG00000233528.1; OTTHUMG00000017162.1; TCONS_00021581


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.7972 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00430:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK5-6:1
3.1 lnc-SLITRK5-6:1
4.0 LINC00430:2
4.1 LINC00430:2
5.0 LINC00430:2
5.1 LINC00430:2
5.2 LINC00430:2