Transcript: LINC00434:2

Basic information

LNCipedia transcript ID: LINC00434:2 
LNCipedia gene ID: LINC00434
RefSeq ID: NR_047022
Location (hg19): chr13:60788481-60842238
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 960 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_047022.1
Alternative gene names: LINC00434


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.3517 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00434:2 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC00434:2
5.1 LINC00434:2
5.2 LINC00434:2