Transcript: LINC00442:3

Basic information

LNCipedia transcript ID: LINC00442:3 
LNCipedia gene ID: LINC00442
Location (hg19): chr13:19582399-19586157
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1518 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000542070.1; LINC00442-201
Alternative gene names: ENSG00000232685.2; LINC00442; OTTHUMG00000016475.2; ENSG00000232685.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.4542 non-coding 
CPAT coding probability 87.51% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00442:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-408E5.4.1-4:2
4.0 LINC00442:3
4.1 LINC00442:3
5.0 LINC00442:3
5.1 LINC00442:3
5.2 LINC00442:3