Transcript: LINC00445:6

Basic information

LNCipedia transcript ID: LINC00445:6 
HGNC Gene Symbol: LINC00445    
HGNC Full Gene Name: long intergenic non-protein coding RNA 445
Ensembl Gene ID: ENSG00000236036
Ensembl Transcript ID: ENST00000456848
RefSeq ID: NR_132115
Location (hg19): chr13:36271864-36273393
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 643 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000456848; ENST00000456848.1; LINC00445-002; OTTHUMT00000044469.1; NR_132115.1
Alternative gene names: ENSG00000236036; RP11-270C18.2; ENSG00000236036.1; LINC00445; OTTHUMG00000016726.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.4842 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00445:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBEA-1:2
3.1 lnc-NBEA-1:2
4.0 LINC00445:6
4.1 LINC00445:6
5.0 LINC00445:6
5.1 LINC00445:6
5.2 LINC00445:6