Transcript: LINC00448:6

Basic information

LNCipedia transcript ID: LINC00448:6 
HGNC Gene Symbol: LINC00448    
HGNC Full Gene Name: long intergenic non-protein coding RNA 448
Ensembl Gene ID: ENSG00000228669
Ensembl Transcript ID: ENST00000438352
Location (hg19): chr13:63305993-63306492
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 402 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438352; ENST00000438352.1; LINC00448-002; OTTHUMT00000045192.1; NONHSAT034153
Alternative gene names: ENSG00000228669; RP11-234O23.1; ENSG00000228669.1; LINC00448; OTTHUMG00000017019.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.7999 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00448:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH20-3:1
3.1 lnc-PCDH20-3:1
4.0 LINC00448:6
4.1 LINC00448:6
5.0 LINC00448:6
5.1 LINC00448:6
5.2 LINC00448:6