Transcript: LINC00458:2

Basic information

LNCipedia transcript ID: LINC00458:2 
LNCipedia gene ID: LINC00458
Location (hg19): chr13:54700998-54707006
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1024 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_108063
Alternative gene names: LncRNA-ES3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.363 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00458:2 no no no no

Available literature

  1. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCDH8-5:4
4.0 LINC00458:2
4.1 LINC00458:2
5.0 LINC00458:2
5.1 LINC00458:2
5.2 LINC00458:2