Transcript: LINC00458:3

Basic information

LNCipedia transcript ID: LINC00458:3 
LNCipedia gene ID: LINC00458
Location (hg19): chr13:54689924-54707001
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1058 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000423442; ENST00000423442.1; LINC00458-003; OTTHUMT00000045118.1; NONHSAT034024
Alternative gene names: ENSG00000234787; RP11-168P6.1; ENSG00000234787.1; LINC00458; OTTHUMG00000016984.1; LncRNA-ES3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.363 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00458:3 no no no no

Available literature

  1. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH8-5:1
3.1 lnc-PCDH8-5:1
4.0 LINC00458:3
4.1 LINC00458:3
5.0 LINC00458:3
5.1 LINC00458:3
5.2 LINC00458:3