Transcript: LINC00458:7

Basic information

LNCipedia transcript ID: LINC00458:7 
HGNC Gene Symbol: LINC00458    
HGNC Full Gene Name: long intergenic non-protein coding RNA 458
Ensembl Gene ID: ENSG00000234787
Ensembl Transcript ID: ENST00000423442
Location (hg19): chr13:54689918-54707001
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1060 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423442.6
Alternative gene names: ENSG00000234787.7; LINC00458; LncRNA-ES3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 26.363 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00458:7 no no no no

Available literature

  1. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00458:7
4.1 LINC00458:7
5.0 LINC00458:7
5.1 LINC00458:7
5.2 LINC00458:7