Transcript: LINC00460:20

Basic information

LNCipedia transcript ID: LINC00460:20 
HGNC Gene Symbol: LINC00460    
HGNC Full Gene Name: long intergenic non-protein coding RNA 460
Ensembl Gene ID: ENSG00000233532
Ensembl Transcript ID: ENST00000644746
Location (hg19): chr13:107030458-107036431
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1322 bp
Exons: 3
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000644746.1
Alternative gene names: ENSG00000233532.6; LINC00460


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -152.0789 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00460:20 no no no no

Available literature

  1. Xing (2018), Long noncoding RNA LINC00460 targets miR-539/MMP-9 to promote meningioma progression and metastasis., Biomed. Pharmacother.
  2. Wang (2016), Identification of long noncoding RNAs as potential novel diagnosis and prognosis biomarkers in colorectal cancer., J. Cancer Res. Clin. Oncol.
  3. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC00460:20
5.1 LINC00460:20
5.2 LINC00460:20