Transcript: LINC00462:2

Basic information

LNCipedia transcript ID: LINC00462:2 
HGNC Gene Symbol: LINC00462    
HGNC Full Gene Name: long intergenic non-protein coding RNA 462
Ensembl Gene ID: ENSG00000233610
Ensembl Transcript ID: ENST00000425350
Location (hg19): chr13:49151110-49152224
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 962 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021651; ENST00000425350; ENST00000425350.1; LINC00462-001; OTTHUMT00000044893.1; NONHSAT033721
Alternative gene names: XLOC_010607; linc-RCBTB2-1; ENSG00000233610; RP11-165D7.4; ENSG00000233610.1; LINC00462; OTTHUMG00000016905.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.5765 non-coding 
CPAT coding probability 16.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00462:2 yes no no no

Available literature

  1. Gong (2017), Long noncoding RNA linc00462 promotes hepatocellular carcinoma progression., Biomed. Pharmacother.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RCBTB2-3:1
3.1 lnc-RCBTB2-3:1
4.0 LINC00462:2
4.1 LINC00462:2
5.0 LINC00462:2
5.1 LINC00462:2
5.2 LINC00462:2