Transcript: LINC00471:6

Basic information

LNCipedia transcript ID: LINC00471:6 
LNCipedia gene ID: LINC00471
Location (hg19): chr2:232373137-232379088
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1320 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000181798.2|ENST00000313064.2
Alternative gene names: MGC43122


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.2129 non-coding 
CPAT coding probability 24.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00471:6 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00471:6
5.0 LINC00471:6
5.1 LINC00471:6
5.2 LINC00471:6