Transcript: LINC00473:10

Basic information

LNCipedia transcript ID: LINC00473:10 
LNCipedia gene ID: LINC00473
Location (hg19): chr6:166315365-166324507
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1183 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012824; NONHSAT116014
Alternative gene names: XLOC_005918; linc-PDE10A-4; bA142J11.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.5599 non-coding 
CPAT coding probability 44.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00473:10 no no no no

Available literature

  1. Pruunsild (2017), Networks of Cultured iPSC-Derived Neurons Reveal the Human Synaptic Activity-Regulated Adaptive Gene Program., Cell Rep
  2. Liang (2016), Non-coding RNA LINC00473 mediates decidualization of human endometrial stromal cells in response to cAMP signaling., Sci Rep
  3. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  4. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics
  5. Reitmair (2012), C6orf176: a novel possible regulator of cAMP-mediated gene expression., Physiol. Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SDIM1-3:4
3.1 lnc-SDIM1-3:6
4.0 LINC00473:10
4.1 LINC00473:10
5.0 LINC00473:10
5.1 LINC00473:10
5.2 LINC00473:10