Transcript: LINC00487:1

Basic information

LNCipedia transcript ID: LINC00487:1 
HGNC Gene Symbol: LINC00487    
HGNC Full Gene Name: long intergenic non-protein coding RNA 487
Ensembl Gene ID: ENSG00000205837
Ensembl Transcript ID: ENST00000382045
RefSeq ID: NR_038369
Location (hg19): chr2:6869300-6910442
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2131 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000382045; ENST00000382045.3; LINC00487-001; OTTHUMT00000323346.2; NONHSAT068913; NR_038369; NR_038369.1
Alternative gene names: ENSG00000205837; AC079923.1; ENSG00000205837.3; LINC00487; OTTHUMG00000151630.2; ENSG00000205837.7; FLJ42418


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.2366 non-coding 
CPAT coding probability 36.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00487:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-3:1
3.1 lnc-CMPK2-3:1
4.0 LINC00487:1
4.1 LINC00487:1
5.0 LINC00487:1
5.1 LINC00487:1
5.2 LINC00487:1