Transcript: LINC00491:4

Basic information

LNCipedia transcript ID: LINC00491:4 
LNCipedia gene ID: LINC00491
RefSeq ID: NR_103753
Location (hg19): chr5:101944196-102007168
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1662 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT103034; NR_103753; NR_103753.1
Alternative gene names: BC008363; LINC00491


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.6203 non-coding 
CPAT coding probability 4.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00491:4 no no no no

Available literature

  1. Li (2014), Long non-coding RNAs expressed in pancreatic ductal adenocarcinoma and lncRNA BC008363 an independent prognostic factor in PDAC., Pancreatology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLCO6A1-1:7
4.0 LINC00491:4
4.1 LINC00491:4
5.0 LINC00491:4
5.1 LINC00491:4
5.2 LINC00491:4