Transcript: LINC00494:5

Basic information

LNCipedia transcript ID: LINC00494:5 
HGNC Gene Symbol: LINC00494    
HGNC Full Gene Name: long intergenic non-protein coding RNA 494
Ensembl Gene ID: ENSG00000235621
Ensembl Transcript ID: ENST00000425021
Location (hg19): chr20:46988755-46989647
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 438 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027942; ENST00000425021; ENST00000425021.1; LINC00494-001; OTTHUMT00000079617.1; NONHSAT080141
Alternative gene names: XLOC_013551; linc-ARFGEF2-4; ENSG00000235621; RP1-66N13.3; ENSG00000235621.3; LINC00494; OTTHUMG00000032682.1; ENSG00000235621.4; ENSG00000235621.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -308.6529 non-coding 
CPAT coding probability 2.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00494:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARFGEF2-3:5
3.1 lnc-ARFGEF2-3:5
4.0 LINC00494:5
4.1 LINC00494:5
5.0 LINC00494:5
5.1 LINC00494:5
5.2 LINC00494:5