Transcript: LINC00494:9

Basic information

LNCipedia transcript ID: LINC00494:9 
LNCipedia gene ID: LINC00494
Location (hg19): chr20:46994819-47000425
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4161 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028201; NONHSAT080143
Alternative gene names: XLOC_013551; linc-ARFGEF2-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.5623 non-coding 
CPAT coding probability 5.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00494:9 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARFGEF2-3:8
3.1 lnc-ARFGEF2-3:8
4.0 LINC00494:9
4.1 LINC00494:9
5.0 LINC00494:9
5.1 LINC00494:9
5.2 LINC00494:9