Transcript: LINC00501:1

Basic information

LNCipedia transcript ID: LINC00501:1 
HGNC Gene Symbol: LINC00501    
HGNC Full Gene Name: long intergenic non-protein coding RNA 501
Ensembl Gene ID: ENSG00000203645
Ensembl Transcript ID: ENST00000425388
Location (hg19): chr3:177012230-177041206
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2046 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425388; ENST00000425388.1; LINC00501-001; OTTHUMT00000348097.1; NONHSAT093342
Alternative gene names: ENSG00000203645; RP11-706D8.2; ENSG00000203645.2; LINC00501; OTTHUMG00000157234.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.8469 non-coding 
CPAT coding probability 3.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00501:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNMB2-6:1
3.1 lnc-KCNMB2-6:1
4.0 LINC00501:1
4.1 LINC00501:1
5.0 LINC00501:1
5.1 LINC00501:1
5.2 LINC00501:1