Transcript: LINC00513:17

Basic information

LNCipedia transcript ID: LINC00513:17 
LNCipedia gene ID: LINC00513
Location (hg19): chr7:130600639-130624493
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 748 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013597; NONHSAT123378
Alternative gene names: XLOC_006252; linc-MKLN1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.0489 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00513:17 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MKLN1-1:2
3.1 lnc-MKLN1-1:2
4.0 lnc-MKLN1-1:2
4.1 lnc-MKLN1-1:2
5.0 lnc-MKLN1-1:2
5.1 LINC00513:7
5.2 LINC00513:17