Transcript: LINC00517:1

Basic information

LNCipedia transcript ID: LINC00517:1 
HGNC Gene Symbol: LINC00517    
HGNC Full Gene Name: long intergenic non-protein coding RNA 517
Ensembl Gene ID: ENSG00000259091
Ensembl Transcript ID: ENST00000553396
Location (hg19): chr14:38370081-38371577
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 774 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553396.1; LINC00517-002; OTTHUMT00000409762.1; NONHSAT036475
Alternative gene names: ENSG00000259091.1; LINC00517; OTTHUMG00000170594.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.4684 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00517:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXA1-2:1
4.0 LINC00517:1
4.1 LINC00517:1
5.0 LINC00517:1
5.1 LINC00517:1
5.2 LINC00517:1