Transcript: LINC00524:1

Basic information

LNCipedia transcript ID: LINC00524:1 
LNCipedia gene ID: LINC00524
Location (hg19): chr14:101872330-101903211
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 281 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000555860.1; LINC00524-001; OTTHUMT00000414718.1; NONHSAT040020
Alternative gene names: ENSG00000259023.1; LINC00524; OTTHUMG00000171679.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.374 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00524:1 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RTL1-7:1
4.0 LINC00524:1
4.1 LINC00524:1
5.0 LINC00524:1
5.1 LINC00524:1
5.2 LINC00524:1