Transcript: LINC00524:3

Basic information

LNCipedia transcript ID: LINC00524:3 
HGNC Gene Symbol: LINC00524    
HGNC Full Gene Name: long intergenic non-protein coding RNA 524
Ensembl Gene ID: ENSG00000259023
Ensembl Transcript ID: ENST00000556987
RefSeq ID: NR_126006
Location (hg19): chr14:101872324-101874259
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 418 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000556987.1; LINC00524-002; OTTHUMT00000414717.1; NR_126006; NR_126006.1
Alternative gene names: ENSG00000259023.1; LINC00524; OTTHUMG00000171679.1; ENSG00000259023.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.374 non-coding 
CPAT coding probability 13.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00524:3 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RTL1-7:3
4.0 LINC00524:3
4.1 LINC00524:3
5.0 LINC00524:3
5.1 LINC00524:3
5.2 LINC00524:3