Transcript: LINC00535:1

Basic information

LNCipedia transcript ID: LINC00535:1 
HGNC Gene Symbol: LINC00535    
HGNC Full Gene Name: long intergenic non-protein coding RNA 535
Ensembl Gene ID: ENSG00000246662
Ensembl Transcript ID: ENST00000501400
RefSeq ID: NR_033858
Location (hg19): chr8:94358695-94712661
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1914 bp
Exons: 11
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000501400; ENST00000501400.1; LINC00535-001; OTTHUMT00000377885.1; NONHSAT127735; NR_033858; NR_033858.1
Alternative gene names: ENSG00000246662; RP11-163D8.1; ENSG00000246662.2; LINC00535; OTTHUMG00000164234.1; ENSG00000246662.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.9058 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00535:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-88J22.1.1-3:1
3.1 lnc-RP11-88J22.1.1-3:1
4.0 LINC00535:1
4.1 LINC00535:1
5.0 LINC00535:1
5.1 LINC00535:1
5.2 LINC00535:1