Transcript: LINC00535:4

Basic information

LNCipedia transcript ID: LINC00535:4 
HGNC Gene Symbol: LINC00535    
HGNC Full Gene Name: long intergenic non-protein coding RNA 535
Ensembl Gene ID: ENSG00000246662
Ensembl Transcript ID: ENST00000517785
Location (hg19): chr8:94225556-94262951
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 264 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517785; ENST00000517785.1; LINC00535-004; OTTHUMT00000377884.1; NONHSAT127731
Alternative gene names: ENSG00000246662; RP11-163D8.1; ENSG00000246662.2; LINC00535; OTTHUMG00000164234.1; ENSG00000246662.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -248.6229 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00535:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-88J22.1.1-3:4
3.1 lnc-RP11-88J22.1.1-3:4
4.0 LINC00535:4
4.1 LINC00535:4
5.0 LINC00535:4
5.1 LINC00535:4
5.2 LINC00535:4