Transcript: LINC00539:1

Basic information

LNCipedia transcript ID: LINC00539:1 
LNCipedia gene ID: LINC00539
Location (hg19): chr13:21877651-21922860
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1179 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000434601; ENST00000434601.1; LINC00422-001; OTTHUMT00000044125.1; NONHSAT032367
Alternative gene names: ENSG00000224429; RP11-101P17.9; ENSG00000224429.1; LINC00422; OTTHUMG00000016541.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.7501 non-coding 
CPAT coding probability 11.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00539:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL136219.1-1:1
3.1 lnc-AL136219.1-2:1
4.0 LINC00539:1
4.1 LINC00539:1
5.0 LINC00539:1
5.1 LINC00539:1
5.2 LINC00539:1