Transcript: LINC00539:3

Basic information

LNCipedia transcript ID: LINC00539:3 
LNCipedia gene ID: LINC00539
Location (hg19): chr13:21877651-21922860
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1178 bp
Exons: 8
Sources: NONCODE v4
Alternative transcript names: NONHSAT032368
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.7501 non-coding 
CPAT coding probability 11.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00539:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL136219.1-2:6
4.0 LINC00539:3
4.1 LINC00539:3
5.0 LINC00539:3
5.1 LINC00539:3
5.2 LINC00539:3