Transcript: LINC00539:4

Basic information

LNCipedia transcript ID: LINC00539:4 
HGNC Gene Symbol: LINC00539    
HGNC Full Gene Name: long intergenic non-protein coding RNA 539
Ensembl Gene ID: ENSG00000224429
Ensembl Transcript ID: ENST00000608957
Location (hg19): chr13:21885181-21922860
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 869 bp
Exons: 7
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608957.1; ENST00000608957.5
Alternative gene names: ENSG00000224429.3; LINC00422; ENSG00000224429.7; LINC00539;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.7501 non-coding 
CPAT coding probability 11.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00539:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL136219.1-2:5
4.0 LINC00539:4
4.1 LINC00539:4
5.0 LINC00539:4
5.1 LINC00539:4
5.2 LINC00539:4