Transcript: LINC00543:5

Basic information

LNCipedia transcript ID: LINC00543:5 
HGNC Gene Symbol: LINC00543    
HGNC Full Gene Name: long intergenic non-protein coding RNA 543
Ensembl Gene ID: ENSG00000260704
Ensembl Transcript ID: ENST00000567234
Location (hg19): chr13:28527663-28529507
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1845 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567234.1; LINC00543-001; OTTHUMT00000410848.1; NONHSAT032677
Alternative gene names: ENSG00000260704.1; LINC00543; OTTHUMG00000170880.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.83 non-coding 
CPAT coding probability 80.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00543:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP5EP2-1:1
4.0 lnc-ATP5EP2-1:1
4.1 lnc-ATP5EP2-1:1
5.0 lnc-ATP5EP2-1:1
5.1 LINC00543:2
5.2 LINC00543:5