Transcript: LINC00547:1

Basic information

LNCipedia transcript ID: LINC00547:1 
HGNC Gene Symbol: LINC00547    
HGNC Full Gene Name: long intergenic non-protein coding RNA 547
Ensembl Gene ID: ENSG00000275226
Ensembl Transcript ID: ENST00000612438
RefSeq ID: NR_040244
Location (hg19): chr13:38109077-38125673
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3314 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021483; NONHSAT033250; NR_040244; ENST00000612438.1; NR_040244.1
Alternative gene names: XLOC_010349; linc-UFM1-3; ENSG00000275226.1; LINC00547; FLJ34747


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.9032 non-coding 
CPAT coding probability 29.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00547:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EXOSC8-2:1
3.1 lnc-EXOSC8-2:1
4.0 LINC00547:1
4.1 LINC00547:1
5.0 LINC00547:1
5.1 LINC00547:1
5.2 LINC00547:1