Transcript: LINC00550:1

Basic information

LNCipedia transcript ID: LINC00550:1 
LNCipedia gene ID: LINC00550
Location (hg19): chr13:69435419-69459457
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3431 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00021516
Alternative gene names: XLOC_010651; linc-PCDH9-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.9053 non-coding 
CPAT coding probability 5.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00550:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLHL1-1:1
3.1 lnc-KLHL1-1:1
4.0 LINC00550:1
4.1 LINC00550:1
5.0 LINC00550:1
5.1 LINC00550:1
5.2 LINC00550:1