Transcript: LINC00554:7

Basic information

LNCipedia transcript ID: LINC00554:7 
LNCipedia gene ID: LINC00554
Location (hg19): chr13:100647154-100650163
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3010 bp
Exons: 1
Sources: Refseq - Dec 2014
Alternative transcript names: NR_047483
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.1415 non-coding 
CPAT coding probability 31.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00554:7 no no no no

Available literature

  1. Chen (2018), The long noncoding RNA lncZic2 drives the self-renewal of liver tumor-initiating cells via the protein kinase C substrates MARCKS and MARCKSL1., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZIC5-1:2
4.0 lnc-ZIC5-1:2
4.1 lnc-ZIC5-1:2
5.0 lnc-ZIC5-1:2
5.1 LINC00554:4
5.2 LINC00554:7