Transcript: LINC00562:11

Basic information

LNCipedia transcript ID: LINC00562:11 
LNCipedia gene ID: LINC00562
Ensembl Gene ID: ENSG00000228573
Ensembl Transcript ID: ENST00000417987
Location (hg19): chr13:48399465-48410091
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 411 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417987; ENST00000417987.1; RP11-279N8.1-001; OTTHUMT00000044839.1; NONHSAT033688
Alternative gene names: ENSG00000228573; RP11-279N8.1; ENSG00000228573.1; OTTHUMG00000016885.1; ; AL138962.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.933 non-coding 
CPAT coding probability 2.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00562:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SUCLA2-4:1
3.1 lnc-SUCLA2-5:1
4.0 LINC00444:5
4.1 LINC00444:5
5.0 LINC00444:5
5.1 LINC00562:6
5.2 LINC00562:11